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nf-core/bacass
Edit

Simple bacterial assembly and annotation pipeline

assemblybacterial-genomesdenovodenovo-assemblygenome-assemblyhybrid-assemblynanoporenanopore-sequencing
This is the development version of the pipeline.
Launch development version https://github.com/nf-core/bacass
  • Introduction
  • Usage
  • Parameters
  • Output
  • Releases
    • 2.5.0
    • 2.4.0
    • 2.3.1
    • 2.3.0
    • 2.2.0
    • 2.1.0
    • 2.0.0
    • 1.1.1
    • 1.1.0
    • 1.0.0
    • dev
Introduction Usage Parameters Output Releases
  • 2.5.0
  • 2.4.0
  • 2.3.1
  • 2.3.0
  • 2.2.0
  • 2.1.0
  • 2.0.0
  • 1.1.1
  • 1.1.0
  • 1.0.0
  • dev
run with
See the docs on how to configure the Seqera Platform CLI.
  • nf-core
  • Nextflow
  • Seqera Platform
subscribers
158
stars
81
open issues
24
open PRs
2
last release
3 months ago
last update
3 months ago
included modules
bakta_baktabakta_baktadbdownloadbusco_buscocanucat_fastq and 20 more modules
included subworkflows
fastq_trim_fastp_fastqcutils_nextflow_pipelineutils_nfcore_pipelineutils_nfschema_plugin
contributors
Github user Daniel-VM
Github user apeltzer
Github user d4straub
Github user lpantano
Github user HaidYi
Github user guriaregojo
Github user brovolia
Github user rpalcab
Github user mlarjim
Github user FloWuenne
Github user maxulysse
Github user bewt85
Github user angelovangel
Github user ewels
Github user xlinxlin
Github user adamrtalbot
Github user drpatelh
Github user mashehu
Github user rivera10
Github user KevinMenden
Github user yolandabq
get help
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