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nf-core/differentialabundance
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Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

atac-seqchip-seqdeseq2differential-abundancedifferential-expressiongsealimmamicroarrayrna-seqshiny
This is the development version of the pipeline.
Launch development version https://github.com/nf-core/differentialabundance
  • Introduction
  • Usage
  • Parameters
  • Output
  • Releases
    • 1.5.0
    • 1.4.0
    • 1.3.1
    • 1.3.0
    • 1.2.0
    • 1.1.1
    • 1.1.0
    • 1.0.1
    • 1.0.0
    • dev
Introduction Usage Parameters Output Releases
  • 1.5.0
  • 1.4.0
  • 1.3.1
  • 1.3.0
  • 1.2.0
  • 1.1.1
  • 1.1.0
  • 1.0.1
  • 1.0.0
  • dev
run with
See the docs on how to configure the Seqera Platform CLI.
  • nf-core
  • Nextflow
  • Seqera Platform
video introduction
Play
subscribers
158
stars
89
open issues
110
open PRs
10
last release
over 1 year ago
last update
over 1 year ago
included modules
affy_justrmaatlasgeneannotationmanipulation_gtf2featureannotationcsvtk_joincustom_filterdifferentialtablecustom_matrixfilter and 22 more modules
included subworkflows
abundance_differential_filterdifferential_functional_enrichmentutils_nextflow_pipelineutils_nfcore_pipelineutils_nfschema_plugin
contributors
Github user WackerO
Github user pinin4fjords
Github user apeltzer
Github user azedinez
Github user ctuni
Github user davidecarlson
Github user smoe
Github user mribeirodantas
Github user drpatelh
Github user jfy133
get help
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