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nf-core/pairgenomealign
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Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results

comparative-genomicsdot-plotgenomicslastpairwise-alignmentsyntenywhole-genome-alignment
This is the development version of the pipeline.
Launch development version https://github.com/nf-core/pairgenomealign
  • Introduction
  • Usage
  • Parameters
  • Output
  • Releases
    • 2.2.1
    • 2.2.0
    • 2.1.0
    • 2.0.0
    • 1.1.1
    • 1.1.0
    • 1.0.0
    • dev
Introduction Usage Parameters Output Releases
  • 2.2.1
  • 2.2.0
  • 2.1.0
  • 2.0.0
  • 1.1.1
  • 1.1.0
  • 1.0.0
  • dev
run with
See the docs on how to configure the Seqera Platform CLI.
  • nf-core
  • Nextflow
  • Seqera Platform
subscribers
172
stars
10
open issues
22
open PRs
1
last release
5 months ago
last update
5 months ago
included modules
assemblyscanlast_dotplotlast_lastallast_lastdblast_mafconvert and 7 more modules
included subworkflows
utils_nextflow_pipelineutils_nfcore_pipelineutils_nfschema_plugin
contributors
Github user charles-plessy
Github user U13bs1125
Github user sateeshperi
get help
Ask a question on Slack Open an issue on GitHub

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