• Home
  • Pipelines
  • Resources
    • Components
    • Modules
    • Subworkflows

    • Configs
    • Shared configs

    • Plugins & Actions
    • nft-utils
    • setup-nextflow
    • setup-nf-test
  • Docs
  • Community
    • What's happening
    • Advisories
    • Blog

    • Events
    • Bytesize Talks
    • Hackathons
    • Training
    • Talks
    • Weekly Helpdesks

    • Programs and groups
    • Special interest groups
    • In-progress RFCs
    • Mentorships
    • Contributors
    • Shop new
    • Connect game 👾
  • About
    • About nf-core
    • Stickers
    • Governance
    • Marketing
    • Code of conduct

    • Publications
    • Statistics

    • Join nf-core
    • Select theme
    • Light
    • Dark
    • System
    • Select theme
    • Light
    • Dark
    • System
    Join nf-core Join nf-core

nf-core/pathogensurveillance
Edit

Surveillance of pathogens using population genomics and sequencing

This is the development version of the pipeline.
Launch development version https://github.com/nf-core/pathogensurveillance
  • Introduction
  • Usage
  • Parameters
  • Output
  • Releases
    • 1.0.0
    • dev
Introduction Usage Parameters Output Releases
  • 1.0.0
  • dev
run with
See the docs on how to configure the Seqera Platform CLI.
  • nf-core
  • Nextflow
  • Seqera Platform
subscribers
173
stars
53
open issues
68
open PRs
1
last release
7 months ago
last update
7 months ago
included modules
bakta_baktabakta_baktadbdownloadbbmap_sendsketchbusco_buscobusco_download and 32 more modules
included subworkflows
utils_nextflow_pipelineutils_nfcore_pipelineutils_nfschema_plugin
contributors
Github user zachary-foster
Github user grunwald
Github user cahuparo
Github user masudermann
Github user logankblair
Github user firuegas
Github user ricardoi
Github user mashehu
Github user marinawitherell
Github user phanhung2
Github user maxulysse
get help
Ask a question on Slack Open an issue on GitHub

See the source code for this page

Making awesome workflows since 2018.

Supported by:

+ + +
See the source code for this website on GitHub:
https://github.com/nf-core/website