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nf-core/scdownstream
Edit

A single cell transcriptomics pipeline for QC, integration and making the data presentable

clusteringdimensionality-reductionintegrationquality-controlscversesingle-cell
This is the development version of the pipeline.
Launch development version https://github.com/nf-core/scdownstream
  • Introduction
  • Usage
  • Parameters
  • Output
    • dev
Introduction Usage Parameters Output
  • dev
run with
See the docs on how to configure the Seqera Platform CLI.
  • nf-core
  • Nextflow
  • Seqera Platform
subscribers
178
stars
83
open issues
40
open PRs
2
last release
not yet released
last update
about 8 hours ago
included modules
anndata_barcodesanndata_getsizecellbender_mergecellbender_removebackgrounddoubletdetection and 5 more modules
included subworkflows
h5ad_removebackground_barcodes_cellbender_anndatautils_nextflow_pipelineutils_nfcore_pipelineutils_nfschema_plugin
contributors
Github user nictru
Github user addityea
Github user tbrittoborges
Github user fasterius
Github user PaulPyl
Github user fbnrst
Github user mashehu
Github user paulinefx-nuc
Github user smoe
Github user LeonHafner
Github user Maj18
Github user stevekm
Github user KallyopeComp
Github user paulinefx
Github user nicoaira
Github user zeehio
Github user mgeaghan
get help
Ask a question on Slack Open an issue on GitHub

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